mpacts.contact.models.reactions. notch

In order to be able to use this module import it like this:

import mpacts.contact.models.reactions.notch
#or assign it to a shorter name
import mpacts.contact.models.reactions.notch as not

Dll4

Description: Delta-like ligand 4 signaling contact model. Geometry combinations available:

PC2 | PC1 - Sphere Rigid_Triangle Rigid_Sphere Rigid_RoundedTriangle Rigid_Quad Rigid_CylinderTop Rigid_CylinderBottom Rigid_Cylinder Rigid_Cone Rigid_Capsule Deformable_Triangle Deformable_RoundedTriangle Deformable_Capsule
Sphere YES YES YES YES YES YES YES YES YES YES YES YES YES

Dll4 (Deformable_Capsule Sphere)

Delta-like ligand 4 signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataDeformable_Cylinder_1_DataCapsule_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_2Assemble_Dll4_1Feedback

Dll4 (Deformable_RoundedTriangle Sphere)

Delta-like ligand 4 signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • abort_if_different (default value = 0) — If ‘True’, inverts the regular function of ‘AbortIfSameParent’, and makes the contact model early abort if the particles’ parents are different. Please do not change this ‘Property’ if you are not sure what you are doing.
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • disable_warning_fake_rounded_triangle (default value = 0) — Disables the printing of the specified warning message.
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataDeformable_NGon_1_Data  <3 >
  ↓
NGon_SphereWarningMessage  <WARN::FakeRoundedTriangle >
  ↓
SingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_2Assemble_Dll4_1AbortIfSameParentFeedback

Dll4 (Deformable_Triangle Sphere)

Delta-like ligand 4 signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • abort_if_different (default value = 0) — If ‘True’, inverts the regular function of ‘AbortIfSameParent’, and makes the contact model early abort if the particles’ parents are different. Please do not change this ‘Property’ if you are not sure what you are doing.
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataDeformable_NGon_1_Data  <3 >
  ↓
NGon_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_2Assemble_Dll4_1AbortIfSameParentFeedback

Dll4 (Rigid_Capsule Sphere)

Delta-like ligand 4 signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cylinder_1_DataCylinder_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_2Assemble_Dll4_1Feedback

Dll4 (Rigid_Cone Sphere)

Delta-like ligand 4 signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cone_1_DataCone_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_2Assemble_Dll4_1Feedback

Dll4 (Rigid_Cylinder Sphere)

Delta-like ligand 4 signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cylinder_1_DataCylinder_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_2Assemble_Dll4_1Feedback

Dll4 (Rigid_CylinderBottom Sphere)

Delta-like ligand 4 signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cylinder_1_DataDisk_Sphere  <Bottom_Selector >
  ↓
SingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_2Assemble_Dll4_1Feedback

Dll4 (Rigid_CylinderTop Sphere)

Delta-like ligand 4 signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cylinder_1_DataDisk_Sphere  <Top_Selector >
  ↓
SingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_2Assemble_Dll4_1Feedback

Dll4 (Rigid_Quad Sphere)

Delta-like ligand 4 signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_NGon_1_Data  <4 >
  ↓
NGon_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_2Assemble_Dll4_1Feedback

Dll4 (Rigid_RoundedTriangle Sphere)

Delta-like ligand 4 signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • disable_warning_fake_rounded_triangle (default value = 0) — Disables the printing of the specified warning message.
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_NGon_1_Data  <3 >
  ↓
NGon_SphereWarningMessage  <WARN::FakeRoundedTriangle >
  ↓
SingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_2Assemble_Dll4_1Feedback

Dll4 (Rigid_Sphere Sphere)

Delta-like ligand 4 signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigidSphere_1_DataSphere_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_2Assemble_Dll4_1Feedback

Dll4 (Rigid_Triangle Sphere)

Delta-like ligand 4 signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_NGon_1_Data  <3 >
  ↓
NGon_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_2Assemble_Dll4_1Feedback

Dll4 (Sphere Sphere)

Delta-like ligand 4 signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataSphere0_1_DataSphere_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_2Assemble_Dll4_1Feedback

Dll4_Equal_Contact

Description: Delta-like ligand 4 signaling contact model based on contact area equality. Geometry combinations available:

PC2 | PC1 - Sphere Rigid_Triangle Rigid_Sphere Rigid_RoundedTriangle Rigid_Quad Rigid_CylinderTop Rigid_CylinderBottom Rigid_Cylinder Rigid_Cone Rigid_Capsule Deformable_Triangle Deformable_RoundedTriangle Deformable_Capsule
Sphere YES YES YES YES YES YES YES YES YES YES YES YES YES

Dll4_Equal_Contact (Deformable_Capsule Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataDeformable_Cylinder_1_DataCapsule_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_Equal_Contact_2Assemble_Dll4_Equal_Contact_1Feedback

Dll4_Equal_Contact (Deformable_RoundedTriangle Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • abort_if_different (default value = 0) — If ‘True’, inverts the regular function of ‘AbortIfSameParent’, and makes the contact model early abort if the particles’ parents are different. Please do not change this ‘Property’ if you are not sure what you are doing.
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • disable_warning_fake_rounded_triangle (default value = 0) — Disables the printing of the specified warning message.
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataDeformable_NGon_1_Data  <3 >
  ↓
NGon_SphereWarningMessage  <WARN::FakeRoundedTriangle >
  ↓
SingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_Equal_Contact_2Assemble_Dll4_Equal_Contact_1AbortIfSameParentFeedback

Dll4_Equal_Contact (Deformable_Triangle Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • abort_if_different (default value = 0) — If ‘True’, inverts the regular function of ‘AbortIfSameParent’, and makes the contact model early abort if the particles’ parents are different. Please do not change this ‘Property’ if you are not sure what you are doing.
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataDeformable_NGon_1_Data  <3 >
  ↓
NGon_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_Equal_Contact_2Assemble_Dll4_Equal_Contact_1AbortIfSameParentFeedback

Dll4_Equal_Contact (Rigid_Capsule Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cylinder_1_DataCylinder_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_Equal_Contact_2Assemble_Dll4_Equal_Contact_1Feedback

Dll4_Equal_Contact (Rigid_Cone Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cone_1_DataCone_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_Equal_Contact_2Assemble_Dll4_Equal_Contact_1Feedback

Dll4_Equal_Contact (Rigid_Cylinder Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cylinder_1_DataCylinder_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_Equal_Contact_2Assemble_Dll4_Equal_Contact_1Feedback

Dll4_Equal_Contact (Rigid_CylinderBottom Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cylinder_1_DataDisk_Sphere  <Bottom_Selector >
  ↓
SingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_Equal_Contact_2Assemble_Dll4_Equal_Contact_1Feedback

Dll4_Equal_Contact (Rigid_CylinderTop Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cylinder_1_DataDisk_Sphere  <Top_Selector >
  ↓
SingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_Equal_Contact_2Assemble_Dll4_Equal_Contact_1Feedback

Dll4_Equal_Contact (Rigid_Quad Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_NGon_1_Data  <4 >
  ↓
NGon_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_Equal_Contact_2Assemble_Dll4_Equal_Contact_1Feedback

Dll4_Equal_Contact (Rigid_RoundedTriangle Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • disable_warning_fake_rounded_triangle (default value = 0) — Disables the printing of the specified warning message.
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_NGon_1_Data  <3 >
  ↓
NGon_SphereWarningMessage  <WARN::FakeRoundedTriangle >
  ↓
SingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_Equal_Contact_2Assemble_Dll4_Equal_Contact_1Feedback

Dll4_Equal_Contact (Rigid_Sphere Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigidSphere_1_DataSphere_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_Equal_Contact_2Assemble_Dll4_Equal_Contact_1Feedback

Dll4_Equal_Contact (Rigid_Triangle Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_NGon_1_Data  <3 >
  ↓
NGon_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_Equal_Contact_2Assemble_Dll4_Equal_Contact_1Feedback

Dll4_Equal_Contact (Sphere Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • D_Max2 — the maximal Dll4 value
    • D_Max — the maximal Dll4 value
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • delta2 — time constant for Dll4 activation by VEGFR_E
    • delta — time constant for Dll4 activation by VEGFR_E
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataSphere0_1_DataSphere_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Dll4_Equal_Contact_2Assemble_Dll4_Equal_Contact_1Feedback

Notch

Description: Notch signaling contact model. Geometry combinations available:

PC2 | PC1 - Sphere Rigid_Triangle Rigid_Sphere Rigid_RoundedTriangle Rigid_Quad Rigid_CylinderTop Rigid_CylinderBottom Rigid_Cylinder Rigid_Cone Rigid_Capsule Deformable_Triangle Deformable_RoundedTriangle Deformable_Capsule
Sphere YES YES YES YES YES YES YES YES YES YES YES YES YES

Notch (Deformable_Capsule Sphere)

Notch signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataDeformable_Cylinder_1_DataCapsule_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_2Assemble_Notch_1Feedback

Notch (Deformable_RoundedTriangle Sphere)

Notch signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • abort_if_different (default value = 0) — If ‘True’, inverts the regular function of ‘AbortIfSameParent’, and makes the contact model early abort if the particles’ parents are different. Please do not change this ‘Property’ if you are not sure what you are doing.
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • disable_warning_fake_rounded_triangle (default value = 0) — Disables the printing of the specified warning message.
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataDeformable_NGon_1_Data  <3 >
  ↓
NGon_SphereWarningMessage  <WARN::FakeRoundedTriangle >
  ↓
SingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_2Assemble_Notch_1AbortIfSameParentFeedback

Notch (Deformable_Triangle Sphere)

Notch signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • abort_if_different (default value = 0) — If ‘True’, inverts the regular function of ‘AbortIfSameParent’, and makes the contact model early abort if the particles’ parents are different. Please do not change this ‘Property’ if you are not sure what you are doing.
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataDeformable_NGon_1_Data  <3 >
  ↓
NGon_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_2Assemble_Notch_1AbortIfSameParentFeedback

Notch (Rigid_Capsule Sphere)

Notch signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cylinder_1_DataCylinder_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_2Assemble_Notch_1Feedback

Notch (Rigid_Cone Sphere)

Notch signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cone_1_DataCone_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_2Assemble_Notch_1Feedback

Notch (Rigid_Cylinder Sphere)

Notch signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cylinder_1_DataCylinder_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_2Assemble_Notch_1Feedback

Notch (Rigid_CylinderBottom Sphere)

Notch signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cylinder_1_DataDisk_Sphere  <Bottom_Selector >
  ↓
SingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_2Assemble_Notch_1Feedback

Notch (Rigid_CylinderTop Sphere)

Notch signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cylinder_1_DataDisk_Sphere  <Top_Selector >
  ↓
SingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_2Assemble_Notch_1Feedback

Notch (Rigid_Quad Sphere)

Notch signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_NGon_1_Data  <4 >
  ↓
NGon_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_2Assemble_Notch_1Feedback

Notch (Rigid_RoundedTriangle Sphere)

Notch signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • disable_warning_fake_rounded_triangle (default value = 0) — Disables the printing of the specified warning message.
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_NGon_1_Data  <3 >
  ↓
NGon_SphereWarningMessage  <WARN::FakeRoundedTriangle >
  ↓
SingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_2Assemble_Notch_1Feedback

Notch (Rigid_Sphere Sphere)

Notch signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigidSphere_1_DataSphere_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_2Assemble_Notch_1Feedback

Notch (Rigid_Triangle Sphere)

Notch signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_NGon_1_Data  <3 >
  ↓
NGon_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_2Assemble_Notch_1Feedback

Notch (Sphere Sphere)

Notch signaling contact model.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataSphere0_1_DataSphere_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_2Assemble_Notch_1Feedback

Notch_Equal_Contact

Description: Notch signaling contact model based on contact area equality. Geometry combinations available:

PC2 | PC1 - Sphere Rigid_Triangle Rigid_Sphere Rigid_RoundedTriangle Rigid_Quad Rigid_CylinderTop Rigid_CylinderBottom Rigid_Cylinder Rigid_Cone Rigid_Capsule Deformable_Triangle Deformable_RoundedTriangle Deformable_Capsule
Sphere YES YES YES YES YES YES YES YES YES YES YES YES YES

Notch_Equal_Contact (Deformable_Capsule Sphere)

Notch signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataDeformable_Cylinder_1_DataCapsule_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_Equal_Contact_2Assemble_Notch_Equal_Contact_1Feedback

Notch_Equal_Contact (Deformable_RoundedTriangle Sphere)

Notch signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • abort_if_different (default value = 0) — If ‘True’, inverts the regular function of ‘AbortIfSameParent’, and makes the contact model early abort if the particles’ parents are different. Please do not change this ‘Property’ if you are not sure what you are doing.
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • disable_warning_fake_rounded_triangle (default value = 0) — Disables the printing of the specified warning message.
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataDeformable_NGon_1_Data  <3 >
  ↓
NGon_SphereWarningMessage  <WARN::FakeRoundedTriangle >
  ↓
SingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_Equal_Contact_2Assemble_Notch_Equal_Contact_1AbortIfSameParentFeedback

Notch_Equal_Contact (Deformable_Triangle Sphere)

Notch signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • abort_if_different (default value = 0) — If ‘True’, inverts the regular function of ‘AbortIfSameParent’, and makes the contact model early abort if the particles’ parents are different. Please do not change this ‘Property’ if you are not sure what you are doing.
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataDeformable_NGon_1_Data  <3 >
  ↓
NGon_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_Equal_Contact_2Assemble_Notch_Equal_Contact_1AbortIfSameParentFeedback

Notch_Equal_Contact (Rigid_Capsule Sphere)

Notch signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cylinder_1_DataCylinder_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_Equal_Contact_2Assemble_Notch_Equal_Contact_1Feedback

Notch_Equal_Contact (Rigid_Cone Sphere)

Notch signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cone_1_DataCone_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_Equal_Contact_2Assemble_Notch_Equal_Contact_1Feedback

Notch_Equal_Contact (Rigid_Cylinder Sphere)

Notch signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cylinder_1_DataCylinder_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_Equal_Contact_2Assemble_Notch_Equal_Contact_1Feedback

Notch_Equal_Contact (Rigid_CylinderBottom Sphere)

Notch signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cylinder_1_DataDisk_Sphere  <Bottom_Selector >
  ↓
SingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_Equal_Contact_2Assemble_Notch_Equal_Contact_1Feedback

Notch_Equal_Contact (Rigid_CylinderTop Sphere)

Notch signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cylinder_1_DataDisk_Sphere  <Top_Selector >
  ↓
SingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_Equal_Contact_2Assemble_Notch_Equal_Contact_1Feedback

Notch_Equal_Contact (Rigid_Quad Sphere)

Notch signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_NGon_1_Data  <4 >
  ↓
NGon_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_Equal_Contact_2Assemble_Notch_Equal_Contact_1Feedback

Notch_Equal_Contact (Rigid_RoundedTriangle Sphere)

Notch signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • disable_warning_fake_rounded_triangle (default value = 0) — Disables the printing of the specified warning message.
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_NGon_1_Data  <3 >
  ↓
NGon_SphereWarningMessage  <WARN::FakeRoundedTriangle >
  ↓
SingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_Equal_Contact_2Assemble_Notch_Equal_Contact_1Feedback

Notch_Equal_Contact (Rigid_Sphere Sphere)

Notch signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigidSphere_1_DataSphere_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_Equal_Contact_2Assemble_Notch_Equal_Contact_1Feedback

Notch_Equal_Contact (Rigid_Triangle Sphere)

Notch signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_NGon_1_Data  <3 >
  ↓
NGon_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_Equal_Contact_2Assemble_Notch_Equal_Contact_1Feedback

Notch_Equal_Contact (Sphere Sphere)

Notch signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • N_Max2 — the maximal Notch value
    • N_Max — the maximal Notch value
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • Factor_Dll42 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • Factor_Dll4 (default value = 1) — Factor that determines the influence of neighbour cell Dll4 on Notch. Value should be between 0 and 1. Default=1
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataSphere0_1_DataSphere_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Notch_Equal_Contact_2Assemble_Notch_Equal_Contact_1Feedback

Set_Contact_Number

Description: Delta-like ligand 4 signaling contact model based on contact area equality. Geometry combinations available:

PC2 | PC1 - Sphere Rigid_Triangle Rigid_Sphere Rigid_RoundedTriangle Rigid_Quad Rigid_CylinderTop Rigid_CylinderBottom Rigid_Cylinder Rigid_Cone Rigid_Capsule Deformable_Triangle Deformable_RoundedTriangle Deformable_Capsule
Sphere YES YES YES YES YES YES YES YES YES YES YES YES YES

Set_Contact_Number (Deformable_Capsule Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataDeformable_Cylinder_1_DataCapsule_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Contact_Number_2Assemble_Contact_Number_1Feedback

Set_Contact_Number (Deformable_RoundedTriangle Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • abort_if_different (default value = 0) — If ‘True’, inverts the regular function of ‘AbortIfSameParent’, and makes the contact model early abort if the particles’ parents are different. Please do not change this ‘Property’ if you are not sure what you are doing.
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • disable_warning_fake_rounded_triangle (default value = 0) — Disables the printing of the specified warning message.
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataDeformable_NGon_1_Data  <3 >
  ↓
NGon_SphereWarningMessage  <WARN::FakeRoundedTriangle >
  ↓
SingleValue_Property  <double >
  ↓
N_JKRAssemble_Contact_Number_2Assemble_Contact_Number_1AbortIfSameParentFeedback

Set_Contact_Number (Deformable_Triangle Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • abort_if_different (default value = 0) — If ‘True’, inverts the regular function of ‘AbortIfSameParent’, and makes the contact model early abort if the particles’ parents are different. Please do not change this ‘Property’ if you are not sure what you are doing.
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataDeformable_NGon_1_Data  <3 >
  ↓
NGon_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Contact_Number_2Assemble_Contact_Number_1AbortIfSameParentFeedback

Set_Contact_Number (Rigid_Capsule Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cylinder_1_DataCylinder_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Contact_Number_2Assemble_Contact_Number_1Feedback

Set_Contact_Number (Rigid_Cone Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cone_1_DataCone_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Contact_Number_2Assemble_Contact_Number_1Feedback

Set_Contact_Number (Rigid_Cylinder Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cylinder_1_DataCylinder_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Contact_Number_2Assemble_Contact_Number_1Feedback

Set_Contact_Number (Rigid_CylinderBottom Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cylinder_1_DataDisk_Sphere  <Bottom_Selector >
  ↓
SingleValue_Property  <double >
  ↓
N_JKRAssemble_Contact_Number_2Assemble_Contact_Number_1Feedback

Set_Contact_Number (Rigid_CylinderTop Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_Cylinder_1_DataDisk_Sphere  <Top_Selector >
  ↓
SingleValue_Property  <double >
  ↓
N_JKRAssemble_Contact_Number_2Assemble_Contact_Number_1Feedback

Set_Contact_Number (Rigid_Quad Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_NGon_1_Data  <4 >
  ↓
NGon_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Contact_Number_2Assemble_Contact_Number_1Feedback

Set_Contact_Number (Rigid_RoundedTriangle Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • disable_warning_fake_rounded_triangle (default value = 0) — Disables the printing of the specified warning message.
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_NGon_1_Data  <3 >
  ↓
NGon_SphereWarningMessage  <WARN::FakeRoundedTriangle >
  ↓
SingleValue_Property  <double >
  ↓
N_JKRAssemble_Contact_Number_2Assemble_Contact_Number_1Feedback

Set_Contact_Number (Rigid_Sphere Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigidSphere_1_DataSphere_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Contact_Number_2Assemble_Contact_Number_1Feedback

Set_Contact_Number (Rigid_Triangle Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!
    • flip_normals (default value = 0) — Optionally flip normals if sphere is more than its radius submerged. In most cases, we recommend that you leave this option to its default ‘false’.
    • reject_large_overlap (default value = 1) — Optionally reject overlaps reject_overlap_r times larger than the radius. Unless you have a fully concave ‘container’ geometry, we recommend that you leave this value to its default ‘true’.
    • reject_overlap_r (default value = 1) — If reject_large_overlap is True, this specifies the number of sphere radii of overlap that should be rejected (Default=1).

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataRigid_NGon_1_Data  <3 >
  ↓
NGon_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Contact_Number_2Assemble_Contact_Number_1Feedback

Set_Contact_Number (Sphere Sphere)

Delta-like ligand 4 signaling contact model based on contact area equality.

Parallel Compatible: No

Properties:

  • Required keywords:
    • E1 (kg . m^-1 . s^-2) — Young modulus material 1.
    • E2 (kg . m^-1 . s^-2) — Young modulus material 2.
    • nu1 (1) — Poisson ratio material 1.
    • nu2 (1) — Poisson ratio material 2.
    • pc1 — The first particle container in the binary contact detection.
    • pc2 — The second particle container in the binary contact detection. If contact detection within the same particle container is desired, and it is applicable for the contactmodel, pass the same pc to both pc1 and pc2.
  • Optional keywords:
    • attrConst1 (kg . s^-2) (default value = 0) — Adhesion energy of material 1
    • attrConst2 (kg . s^-2) (default value = 0) — Adhesion energy of material 2
    • attrConst (kg . s^-2) (default value = -1) — Combined adhesion energy. Always over-rules attrConst1 and attrConst2, even if given as arrays!

This contact model is composed out of following pieces (click on the chain elements to get more information):

DefaultBoilerPlateSphere0_2_DataSphere0_1_DataSphere_SphereSingleValue_Property  <double >
  ↓
N_JKRAssemble_Contact_Number_2Assemble_Contact_Number_1Feedback